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LAM(7) |
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LAM − introduction to Local Area Multicomputer (LAM)
LAM is an MPI programming environment and development system for a message-passing parallel machine constituted with heterogeneous UNIX computers on a network. With LAM, a dedicated cluster or an existing network computing infrastructure can act as one parallel computer solving one compute-intensive problem. LAM emphasizes productivity in the application development cycle with extensive control and monitoring functionality. The user can easily debug the common errors in parallel programming and is well equipped to diagnose more difficult problems.
LAM features a full implementation of the MPI communication standard, with the exception that the MPI_CANCEL function will not properly cancel messages that have been sent.
Overview of
Commands and Libraries
introu(1), introc(2), INTROF(2)
Starting /
Stopping LAM
recon(1), lamboot(1), lamhalt(1), lamnodes(1), wipe(1),
tping(1), lamgrow(1), lamshrink(1)
Compiling
MPI Applications
mpicc(1), mpiCC(1), mpif77(1)
Running MPI
Applications
mpirun(1), lamclean(1)
Running
Non-MPI Applications
lamexec(1)
Monitoring
MPI Processes
mpitask(1), mpimsg(1), lamtrace(1), fstate(1), doom(1),
bfctl(1), MPIL_Comm_id(2), MPIL_Trace_on(2)
LAM’s
MPI Implementation
mpi(7)
Reference Documents
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"LAM Frequently Asked Questions" |
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"MPI Primer / Developing with LAM", Ohio Supercomputer Center | |
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"MPI: A Message-Passing Interface Standard", Message-Passing Interface Forum, version 1.1 |
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"MPI-2: Extensions to the Message Passing Interface", Message Passing Interface Forum, version 2.0 |
at http://www.mpi-forum.org/
MPI Quick Tutorials
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"LAM/MPI ND User Guide / Introduction" |
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"MPI: It’s Easy to Get Started" |
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"MPI: Everyday Datatypes" |
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"MPI: Everyday Collective Communication" |
The user creates a file listing the participating machines in the cluster.
% cat lamhosts
# a 2-node LAM
beowulf1.lam-mpi.org
beowulf2.lam-mpi.org
Each machine will be given a node identifier (nodeid) starting with 0 for the first listed machine, 1 for the second, etc.
The recon(1) tool verifies that the cluster is bootable.
% recon -v
lamhosts
recon: -- testing n0 (beowulf1.lam-mpi.org)
recon: -- testing n1 (beowulf2.lam-mpi.org)
The lamboot(1) tool actually starts LAM on the cluster.
% lamboot -v
lamhosts
LAM 6.5.4 - University of Notre Dame
Executing hboot on n0 (beowulf1.lam-mpi.org)...
Executing hboot on n1 (beowulf2.lam-mpi.org)...
lamboot(1) returns to the UNIX shell prompt. LAM does not force a canned environment or a "LAM shell". The tping(1) command builds user confidence that the cluster and LAM are running.
% tping -c1 N
1 byte from 2 nodes: 0.009 secs
Compiling
MPI Programs
mpicc(1), mpicp(1), and mpif77(1) are wrappers for the C,
C++, and F77 compilers, respectively. They link the LAM
libraries and set up header and library search directories.
Beginning with LAM version 6.3, the MPI library is also
automatically linked to user applications; the use of the
−lmpi command line argument is no longer
necessary.
% mpicc -o foo
foo.c
% mpif77 -o foo foo.f
Executing
MPI Programs
An MPI application is started by one invocation of the
mpirun(1) command. An SPMD application can be started on the
mpirun(1) command line.
% mpirun -v -c
2 trivial
2445 trivial running on n0 (o)
361 trivial running on n1
An application with multiple programs must be described in an application schema, a file that lists each program and its target node(s). See appschema(5).
% cat appfile
# 1 master, 2 slaves
n0 master
n0-1 slave
% mpirun -v
appfile
3292 master running on n0 (o)
3296 slave running on n0 (o)
412 slave running on n1
Applications can choose, at run-time, to use the "daemon" mode of communication or the "client-to-client" mode. Each has advantages and disadvantages, which are discussed in MPI(7).
Monitoring
MPI Applications
The full MPI synchronization status of all processes and
messages can be displayed at any time. This includes the
source and destination ranks, the message tag, the
communicator, and the function invoked.
% mpitask
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TASK (G/L) |
FUNCTION |
PEER|ROOT |
TAG |
COMM |
COUNT |
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DATATYPE | |||||
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0/0 trivial |
Ssend |
1/1 |
123 |
WORLD |
64 |
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INT | |||||
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1/1 trivial |
Recv |
0/0 |
456 |
WORLD |
64 |
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INT |
Process rank 0 is blocked sending a synchronous message (MPI_Ssend()) to process rank 1 on tag 123 using the MPI_COMM_WORLD communicator. The message contains 64 integers. Process rank 1 is blocked on MPI_Recv() on the same communicator with a different tag.
% mpimsg
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SRC (G/L) |
DEST (G/L) |
TAG |
COMM |
COUNT |
DATATYPE |
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MSG | |||||
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0/0 |
1/1 |
123 |
WORLD |
64 |
INT |
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n1,#0 |
The unreceived message can be examined with mpimsg(1). The expected tag and communicator are shown, along with a message identifier that can be used to display the message contents.
Terminating
Applications
All user processes and messages can be removed, without
restarting LAM.
% lamclean -v
killing processes, done
sweeping messages, done
closing files, done
sweeping traces, done
This command is frequently used between MPI runs, especially while developing and debugging MPI programs.
Terminating
LAM
The lamhalt(1) tool removes all traces of the LAM session on
the network.
% lamhalt
LAM 6.5.4 - University of Notre Dame
Alternatively, if for some reason lamhalt(1) is not able to shut the running LAM down properly, the deprecated wipe(1) command can be used with the boot schema that was used to originally boot LAM:
% wipe -v
lamhosts
Executing tkill on n0 (beowulf1.lam-mpi.org)...
Executing tkill on n1 (beowulf2.lam-mpi.org)...
LAM runs on each computer as a single UNIX daemon uniquely structured as a nano-kernel and hand-threaded virtual processes. The nano-kernel component provides a simple message-passing, rendez-vous service to local processes. Some of the in-daemon processes form a network communication subsystem, which transfers messages to and from other LAM daemons on other machines. The network subsystem adds features like packetization and buffering to the base synchronization. Other in-daemon processes are servers for remote capabilities, such as program execution and parallel file access. The layering is quite distinct: the nano-kernel has no connection with the network subsystem, which has no connection with the servers. Users can configure in or out services as necessary.
The unique software engineering of LAM is transparent to users and system administrators, who only see a conventional daemon. System developers can de-cluster the daemon into a daemon containing only the nano-kernel and several full client processes. This developer’s mode is still transparent to users but exposes LAM’s highly modular components to simplified individual debugging. It also reveals LAM’s evolution from Trollius, which ran natively on scalable multicomputers and joined them to the UNIX network through a uniform programming interface. Trollius is the ultimate heterogeneous parallel environment.
The network layer in LAM is a documented, primitive and abstract layer on which to implement a more powerful communication standard like MPI.
Debugging
A most important feature of LAM is hands-on control of the
multicomputer. There is very little that cannot be seen or
changed at runtime. Programs residing anywhere can be
executed anywhere, stopped, resumed, killed, and watched the
whole time. Messages can be viewed anywhere on the
multicomputer and buffer constraints tuned as experience
with the application dictates. If the synchronization of a
process and a message can be easily displayed, mismatches
resulting in bugs can easily be found. These and other
services are available both as a programming library and as
utility programs run from any shell.
MPI
Implementation
MPI synchronization boils down to four variables: context,
tag, source rank, destination rank. These are mapped to
LAM’s abstract synchronization at the network layer.
MPI debugging tools interpret the LAM information with the
knowledge of the LAM/MPI mapping and present detailed
information to MPI programmers.
A significant portion of the MPI specification can be (and is) implemented completely within the runtime system and independent of the underlying environment.
As with all MPI implementations, LAM must synchronize the launch of MPI applications so that all processes locate each other before user code is entered. The mpirun(1) command achieves this after finding and loading the program(s) which constitute the application. A simple SPMD application can be specified on the mpirun(1) command line, while a more complex configuration is described in a separate file, called an application schema.
MPI programs developed on LAM can be moved without source code changes to any other platform that supports MPI.
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LAM(7) | |